Eleftheriadi, K. Vázquez-Valls, M. & Fernández, R. (2025). An evaluation of clustering and assembly strategies from Iso-Seq data in the absence of reference genomes in non-model animals. bioRxiv, 2025.09.18.677004. DOI: https://doi.org/10.1101/2025.09.18.677004.
Martínez-Redondo, G. I., Perez-Canales, F. M., Carbonetto, B., Fernández, J. M., Barrios-Núñez, I.,Vázquez-Valls, M., Cases, I. & Fernández, R. (2025). FANTASIA leverages language models to decode the functional dark proteome across the animal tree of life. Communications Biology, 8(1), 1227. DOI: https://doi.org/10.1093/gbe/evae235.
2024
Martínez-Redondo, G. I., Vargas-Chávez, C., Eleftheriadi, K., Benítez-Álvarez, L., Vázquez-Valls, M., & Fernández, R. (2024). MATEdb2, a collection of high-quality metazoan proteomes across the Animal Tree of Life to speed up phylogenomic studies. Genome Biology and Evolution, 16(11), evae235. DOI: https://doi.org/10.1038/s42003-025-08651-2.